I would like to determine consensus sequences in unaligned reads. I know that the usual way is to first align them to a reference, but for technical reasons this is not possible.
Please note that I am not trying to do de novo genome assembly; I am just trying to look for common motifs in unaligned reads. Is there a straightforward way of doing this?
Thanks
Please note that I am not trying to do de novo genome assembly; I am just trying to look for common motifs in unaligned reads. Is there a straightforward way of doing this?
Thanks