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  • woa
    Member
    • Mar 2011
    • 13
    #1

    Find Sequences with common sub sequence and same overhang

    I'm looking some implementation in Python for finding out sets of sequences of equal length and which share a common sub sequence and a common overhang when aligned (without gaps) from a large collection of sequences as follows.

    Their alphabetically sorted sequence will be the same , but that will include just any permuted sequence as well, which I don't want. Can the Python 'difflib' library be of any help? Thanks

    Code:
    XYZASDFL
   :::::
   ASDFLXYZ
    :::::::
    SDFLXYZA
    Last edited by woa; 12-10-2022, 10:20 AM.
    Tags: None
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