We develop a GUI software tool for processing SAM files. The software allows users to accurately estimate gene expression scores using short reads originating from both exons and exon-exon junctions, to generate wiggle files for visualization in UCSC genome browser, and to generate an alignment statistics report. This GUI tool will facilitate the downstream analysis of genomic sequencing data.
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Last edited by xuguorong; 02-10-2010, 04:33 PM. -
SAMMate - documentation
Hi xuguorong,
This look as as if it will be very useful - is there any documentation, even just some notes would help
Many thanks
Mike -
Hi Mike,
You can access the home page of SAMMate to get the documentation and usage!
http://SAMMate.sourceforge.net
If you need any other help, please let me know!Comment
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SAMMate documentation
Hi xuguorong,
found it. Many thanks. I'll let you know how we get on with it here at SBL
(www.sbl-uk.org).
MikeComment
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