We develop a GUI software tool for processing SAM files. The software allows users to accurately estimate gene expression scores using short reads originating from both exons and exon-exon junctions, to generate wiggle files for visualization in UCSC genome browser, and to generate an alignment statistics report. This GUI tool will facilitate the downstream analysis of genomic sequencing data.
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Last edited by xuguorong; 02-10-2010, 04:33 PM. -
SAMMate - documentation
Hi xuguorong,
This look as as if it will be very useful - is there any documentation, even just some notes would help
Many thanks
Mike -
Hi Mike,
You can access the home page of SAMMate to get the documentation and usage!
If you need any other help, please let me know!Comment
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SAMMate documentation
Hi xuguorong,
found it. Many thanks. I'll let you know how we get on with it here at SBL
(www.sbl-uk.org).
MikeComment
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The immune system’s power comes from its genetic diversity, allowing myriad threats to be neutralized through first recognizing foreign antigens. That diversity is also what makes the immune system so difficult to study. Recent advances in sequencing technology and computational biology, however, are giving researchers new tools to understand immune responses and immune-related diseases in greater detail.
This convergence of genetics, immunology, and computation...09-01-2026, 05:41 AM
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