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  • Genospect
    Junior Member
    • Feb 2025
    • 1

    Short Survey on Genomic Data Management & Analysis Workflows

    Hello everyone,

    I’m conducting a brief 5-minute survey to better understand the challenges and needs of researchers working with NGS data, bioinformatics pipelines, and advanced analytics (e.g., ML/AI). Your feedback will directly influence the design of a new platform aimed at streamlining data integration, reproducible workflows, and optional ML-driven analyses.
    • Who should participate?
      Anyone involved in sequencing data management, pipeline development, or bioinformatics research—whether academic, industry, or service providers.
    • What’s in it for you?
      • Help shape a tool that could reduce data wrangling headaches and improve collaboration.
      • Optionally enter a drawing for a small incentive (e.g., gift card or early beta access) if you wish.
    • Survey Link: https://bit.ly/4gCGnbC

    Why this matters:
    We all know how fragmented the current NGS tool ecosystem can be—multiple file formats, ad hoc scripts, versioning nightmares. By gathering community insights, we hope to address the real pain points, ensuring the final product aligns with everyday research workflows and best practices in reproducible science.

    Questions or Comments?
    Feel free to reply here or send me a direct message. I’m happy to discuss any aspect of the project or the survey.

    Thank you for your time and expertise!

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  • GATTACAT
    Reply to Nine Things a Sample Prep Scientist Thinks About Before Sequencing
    by GATTACAT
    Love this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.
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  • SEQadmin2
    Nine Things a Sample Prep Scientist Thinks About Before Sequencing
    by SEQadmin2


    I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.

    Here are nine questions we think about, in roughly the order they matter, before...
    06-18-2026, 07:11 AM

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