QC matrix for structural variant

[Parikh]

Dear All,

I am using Breakdancer/Pindel/GenomeSTRiP in conjunction with other structural variant (SV) calling methods to identify a list of SV calls based on Illumina sequence data. I would like to obtain a detailed QC matrix for each SV (including information about supporting reads, quality of reads etc). However, I have several other SV calls in addition to generated by Breakdancer/Pindel/GenomeSTRiP. Would it possible to generate QC matrix for each SV call (genomic regions provided in .bed file) from bam files using any specific bioinformatic tool or combination of several tools?

Thanks for your help!