Hi all,
I tried to use miRTRAP to predict miRNAs. I generated a small sample dataset, and it worked. Bu when I applied to the real dataset, the memory usage of the first step (printReadRegions.pl) is VERY large: for one dataset, I have 3 gff files and the total size is 57MB. The first step took 17G memeory, and I got some results. For another dataset with two sample whose total size is 149MB, it took more than 60G memory and got killed. Because I can get some result from the sample dataset, I assume that I ran the program right (there is no warning or error during the execution on the sample and real dataset). Anyone had the same problem? Or anyone know what's the problem?
Thanks.
Jack
I tried to use miRTRAP to predict miRNAs. I generated a small sample dataset, and it worked. Bu when I applied to the real dataset, the memory usage of the first step (printReadRegions.pl) is VERY large: for one dataset, I have 3 gff files and the total size is 57MB. The first step took 17G memeory, and I got some results. For another dataset with two sample whose total size is 149MB, it took more than 60G memory and got killed. Because I can get some result from the sample dataset, I assume that I ran the program right (there is no warning or error during the execution on the sample and real dataset). Anyone had the same problem? Or anyone know what's the problem?
Thanks.
Jack