Tools for In-Silico MLVA/VNTR Analysis?

[verdeseq]

Hi All,

I was looking for tools to perform in silico MLVA (Multiple Loci VNTR Analysis) searches against whole genome bacterial data. (Inputs: primer pairs + fasta genome sequence).

I came across this paper/tool (MIST) that looked promising, but it appears the MLVA testing is still a work in progress.
(https://bitbucket.org/peterk87/micro...typer/overview

Ideally, looking for a downloadable standalone unix/linux-based tool (vs. a web-based service)

Any suggestions?
Thanks in advance

[JohnN]

My advice would be to contact Eduardo and Peter K. as they are very collaborative, smart and resourceful.

[verdeseq]

@JohnN Thanks for the tip. I've reached out to them via email. I'll update this thread with what I find out (in case anybody else is looking for a similar tool).