ILLUMINACLIP adapter.fa file creation

[arcolombo698]

Hello.

I am using trimmomatic and know that the sequences to be removed are

Adapter 5’ AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT
>>TruSeq Adapter, Index 1
>>5’ GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGCCGTCTTCTGCTTG
>>TruSeq Adapter, Index 2
>>5’ GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCCGTCTTCTGCTTG
>>TruSeq Adapter, Index 3
>>5’ GATCGGAAGAGCACACGTCTGAACTCCAGTCACTTAGGCATCTCGTATGCCGTCTTCTGCTTG


however I do not know how to create the adapter.fa file knowing just the sequence names.

Could anyone provide a sample adapter.fa file that they use as a adapter reference for trimming using the command ILLUMINACLIP ?

my other option is to use adaptercut, but I want to try the reference adapter.fa first...seems easier

[GenoMax]

see the answer in: http://seqanswers.com/forums/showpos...20&postcount=7