Does cn.mops only be used to call CNV on human species?

[juanjingmiao]

CN.MOPS was used to call CNV. Does the tool can be used on the non-human species?
I am looking for some tools for calling CNVs in the plant species. so I want to know the limitation of CN.MOPS, and whether the cn.mops is suitable for the non-human species.

Does anyone have the experience, or know CN.MOPS?

Thanks!

[gkl]

cn.MOPS for plant genomes

cn.MOPS can certainly be used with other species and studies on bacterial and plant genomes have already been published.
You can use cn.MOPS for plant genomes right away; the only thing to be careful with is ploidy. cn.MOPS was published for diploid genomes, for haploid genomes the software is also implemented in the bioconductor species. There are also tetraploid (and higher) plant species...

You can contact me via [email protected].

Regards,
Günter

[juanjingmiao]

cn.mops freec

I am trying to detect CNV in rice with cn.mops and freec. There have been large different in the two results. which should I chose? How to verify the accuracy of the results？

Thank you！

[gkl]

I'll contact you via email to help you with the evaluation!