When I tried to specify the method using "logFC", a series of warning messaged came up:
plotMDS(y,col=color,method="logFC")
Warning messages:
1: In plot.window(...) : "method" is not a graphical parameter
2: In plot.xy(xy, type, ...) : "method" is not a graphical parameter
3: In axis(side = side, at = at, labels = labels, ...) :
"method" is not a graphical parameter
4: In axis(side = side, at = at, labels = labels, ...) :
"method" is not a graphical parameter
5: In box(...) : "method" is not a graphical parameter
6: In title(...) : "method" is not a graphical parameter
what is the default method? How should I fix this issue?
Thanks a lot for any input
plotMDS(y,col=color,method="logFC")
Warning messages:
1: In plot.window(...) : "method" is not a graphical parameter
2: In plot.xy(xy, type, ...) : "method" is not a graphical parameter
3: In axis(side = side, at = at, labels = labels, ...) :
"method" is not a graphical parameter
4: In axis(side = side, at = at, labels = labels, ...) :
"method" is not a graphical parameter
5: In box(...) : "method" is not a graphical parameter
6: In title(...) : "method" is not a graphical parameter
what is the default method? How should I fix this issue?
Thanks a lot for any input
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