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  • Jonathan87
    Member
    • Dec 2012
    • 12

    #1

    BWA aligner: no install instructions ?

    I have downloaded bwa and unpacked it via tar xfvj

    What do I have to do now?

    I see files named COPYING, README.md and NEWS. None of them contains install instructions. There must be instructions but I cannot seem to find them ?
  • adamdeluca
    Member
    • Jul 2010
    • 95

    #2
    use the "make" command

    Comment

    • GenoMax
      Senior Member
      • Feb 2008
      • 7142

      #3
      What OS are you using?

      BWA is supplied as a "source only" program. You will need to compile the source code (which is where "make" comes into play) for your OS.

      Comment

      • Jonathan87
        Member
        • Dec 2012
        • 12

        #4
        Thank you adamdeluca!

        But seriously, where are the instructions ? How can you publish software without giving the slightest hint of how to install it.

        Might be obvious for non-newbie linux users but in my eyes that's kind of ignorant not even dropping 2 sentences of how to install :/

        I have already seen configure commands and others so I was afraid I would cause more problems than I already had if I was too hasty.

        Well thanks again for the help!

        Edit: I'm using ubuntu, the make command is what had to be done!

        Comment

        • dpryan
          Devon Ryan
          • Jul 2011
          • 3478

          #5
          It's the first few lines of the README.md file:

          Code:
          git clone https://github.com/lh3/bwa.git
          cd bwa; make
          Though, to be fair, those aren't exactly the best instructions I've ever read (especially since you can skip the git... portion)!

          Comment

          • zee
            NGS specialist
            • Apr 2008
            • 249

            #6
            Originally posted by Jonathan87 View Post
            Thank you adamdeluca!

            But seriously, where are the instructions ? How can you publish software without giving the slightest hint of how to install it.

            Might be obvious for non-newbie linux users but in my eyes that's kind of ignorant not even dropping 2 sentences of how to install :/

            I have already seen configure commands and others so I was afraid I would cause more problems than I already had if I was too hasty.

            Well thanks again for the help!

            Edit: I'm using ubuntu, the make command is what had to be done!
            Welcome to the world of OSS.

            Comment

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