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  • bio_informatics
    Senior Member
    • Nov 2013
    • 182

    #1

    erros with runninng gpcrhmm

    gpcrhmm.pl file.fas
    I am trying to run gpcrhmm on command line, and have been getting errors.
    I have gpcrhmm.pl in path.
    Also, decodeanhmm, lengthFilter.awk, model.bsmod, model.trunc, dec.opt in path.

    I am getting below errors and spits out something like this.

    sh: 1: /home/path/bin/lengthFilter.awk: not found
    Segmentation fault (core dumped)

    pdc-6|HY3.a1|pdc Too short sequence No
    Segmentation fault (core dumped) - is for memory issues, but I have more than 40 gigs free.
    I am running on Virtual machine, 32 bits Linux, Ubuntu.

    I cannot understand how to resolve this issue.
    Kindly help me.
    Last edited by bio_informatics; 01-08-2014, 10:20 PM.
    Bioinformaticscally calm

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