Trinity Error.

[vishwesh]

Hi,
I get the following error on running trinity.
ERROR, no butterfly assemblies reported.

The command used for running trinity is
Trinity.pl --seqType fa --JM 10G --single /home/xxx/Fastaqfiles/xxx_Merged.fa --CPU 2

Can you please let me know what is wrong.

Regards
Vishwesh

[TiborNagy]

I think stdout and stderr contains more information. Can you share it?

[RyNkA]

Maybe you could try options --SS_lib_type F for single end reads.

[vishwesh]

I think stdout and stderr contains more information. Can you share it?

Where can I find stdout and stderr...??

[TiborNagy]

Try to run using this method:
Trinity.pl --seqType fa --JM 10G --single /home/xxx/Fastaqfiles/xxx_Merged.fa --CPU 2 >log.txt 2>err.txt

You redirect the standard output and standard error to a file (log.txt and err.txt respectively) You can learn more about it:

http://tldp.org/HOWTO/Bash-Prog-Intro-HOWTO-3.html