Is there a script or tool that will identify each base position numbering in a bed file of 1200 amplicons? I am trying to identify homopolymers in an exact position not just a region.
So, if there was a 10-base strech of sequence each nucleotide numbered and identified. A=1,A=2,A=3,A=4,A=5,A=6,T=7,C=8,G=9,C=10. Then a homopolymer of 6A could be found instead of saying there is a homopolmer of 6A in the region 1-10. Thank you.
So, if there was a 10-base strech of sequence each nucleotide numbered and identified. A=1,A=2,A=3,A=4,A=5,A=6,T=7,C=8,G=9,C=10. Then a homopolymer of 6A could be found instead of saying there is a homopolmer of 6A in the region 1-10. Thank you.
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