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looking for some software on win7 to do multi-alignment of cpGenome(gb formatted)

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  • #1

    looking for some software on win7 to do multi-alignment of cpGenome(gb formatted)

    hi everyone, i have 20 chloroplast genomes to align, could you introduce some software which can run on win7?
    i've known mauve can do it, but always quitting at the beginning, mafft can't deal with genbank format--only fasta format.
    thanks
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  • #2
    Why not convert the genbank files to fasta and then use maftt?

    How much memory do you have on this machine? If mauve is quitting because of lack of enough memory you may not have much luck with other programs.

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    • #3
      Originally posted by GenoMax View Post
      Why not convert the genbank files to fasta and then use maftt?

      How much memory do you have on this machine? If mauve is quitting because of lack of enough memory you may not have much luck with other programs.
      Thanks for you suggestion, I reinstalled mauve and it works well now!

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