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  • DAnand
    Junior Member
    • Jan 2014
    • 5
    #1

    sRNA seq data analysis

    Hi All,

    I am analyzing sRNA data of mouse from Illumina. I have successfully completed the quality checks, pre-processing and identified differentially expressed sRNAs from my data.
    I would like to annotate the differentially expressed snRNA and snoRNA from the list of differentially expressed sRNA. For doing so I downloaded annotations from useast.enseml.org (http://useast.ensembl.org/info/data/ftp/index.html) but the length of the snRNA and snoRNA are 60bp to 150 bp, which is longer than maximum read length i.e 34bp in sRNA data anlysed. Can anybody tell me is there any way I could find and download mature snRNA and snoRNA sequences which are not longer than 34bp and could be used for annotation?

    Please suggest

    DAnand
    Last edited by DAnand; 01-17-2014, 05:05 PM. Reason: I am not getting any answers so adding some more information
    Tags: None
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