Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • sRNA seq data analysis

    Hi All,

    I am analyzing sRNA data of mouse from Illumina. I have successfully completed the quality checks, pre-processing and identified differentially expressed sRNAs from my data.
    I would like to annotate the differentially expressed snRNA and snoRNA from the list of differentially expressed sRNA. For doing so I downloaded annotations from useast.enseml.org (http://useast.ensembl.org/info/data/ftp/index.html) but the length of the snRNA and snoRNA are 60bp to 150 bp, which is longer than maximum read length i.e 34bp in sRNA data anlysed. Can anybody tell me is there any way I could find and download mature snRNA and snoRNA sequences which are not longer than 34bp and could be used for annotation?

    Please suggest

    DAnand
    Last edited by DAnand; 01-17-2014, 05:05 PM. Reason: I am not getting any answers so adding some more information

Latest Articles

Collapse

  • seqadmin
    Strategies for Sequencing Challenging Samples
    by seqadmin


    Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
    03-22-2024, 06:39 AM
  • seqadmin
    Techniques and Challenges in Conservation Genomics
    by seqadmin



    The field of conservation genomics centers on applying genomics technologies in support of conservation efforts and the preservation of biodiversity. This article features interviews with two researchers who showcase their innovative work and highlight the current state and future of conservation genomics.

    Avian Conservation
    Matthew DeSaix, a recent doctoral graduate from Kristen Ruegg’s lab at The University of Colorado, shared that most of his research...
    03-08-2024, 10:41 AM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, Yesterday, 06:37 PM
0 responses
12 views
0 likes
Last Post seqadmin  
Started by seqadmin, Yesterday, 06:07 PM
0 responses
10 views
0 likes
Last Post seqadmin  
Started by seqadmin, 03-22-2024, 10:03 AM
0 responses
51 views
0 likes
Last Post seqadmin  
Started by seqadmin, 03-21-2024, 07:32 AM
0 responses
68 views
0 likes
Last Post seqadmin  
Working...
X