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I'm attempting to install the MaSuRCA assembly tool using the simple instructions on the quickstart guide. Basically, the instructions say to untar the package, cd into the resulting directory, and then run ./install.sh.
When I do this, the very end of the output gives a set of errors that apparently have to do with jellyfish. I'm not sure how to interpret this. Has anyone else seen this? I'm pasting just the part of the output that contains the errors and occurs at the very end of the process. There were not any obvious errors before this point:
# Output
In file included from sub_commands/count_main.cc:39:
./include/jellyfish/mer_qual_iterator.hpp: In member function âvoid jellyfish::mer_qual_iterator<SequencePool, MerType>::init_from_job()â:
./include/jellyfish/mer_qual_iterator.hpp:108: error: âstruct std::basic_string<char, std::char_traits<char>, std::allocator<char> >â has no member named âcbeginâ
./include/jellyfish/mer_qual_iterator.hpp:109: error: âstruct std::basic_string<char, std::char_traits<char>, std::allocator<char> >â has no member named âcendâ
./include/jellyfish/mer_qual_iterator.hpp:111: error: âstruct std::basic_string<char, std::char_traits<char>, std::allocator<char> >â has no member named âcbeginâ
./include/jellyfish/mer_qual_iterator.hpp:112: error: âstruct std::basic_string<char, std::char_traits<char>, std::allocator<char> >â has no member named âcendâ
make[1]: *** [sub_commands/count_main.o] Error 1
make[1]: *** Waiting for unfinished jobs....
make[1]: Leaving directory `/raid4/cgrb/MaSuRCA-2.2.0/jellyfish'
make: *** [install] Error 2
When I do this, the very end of the output gives a set of errors that apparently have to do with jellyfish. I'm not sure how to interpret this. Has anyone else seen this? I'm pasting just the part of the output that contains the errors and occurs at the very end of the process. There were not any obvious errors before this point:
# Output
In file included from sub_commands/count_main.cc:39:
./include/jellyfish/mer_qual_iterator.hpp: In member function âvoid jellyfish::mer_qual_iterator<SequencePool, MerType>::init_from_job()â:
./include/jellyfish/mer_qual_iterator.hpp:108: error: âstruct std::basic_string<char, std::char_traits<char>, std::allocator<char> >â has no member named âcbeginâ
./include/jellyfish/mer_qual_iterator.hpp:109: error: âstruct std::basic_string<char, std::char_traits<char>, std::allocator<char> >â has no member named âcendâ
./include/jellyfish/mer_qual_iterator.hpp:111: error: âstruct std::basic_string<char, std::char_traits<char>, std::allocator<char> >â has no member named âcbeginâ
./include/jellyfish/mer_qual_iterator.hpp:112: error: âstruct std::basic_string<char, std::char_traits<char>, std::allocator<char> >â has no member named âcendâ
make[1]: *** [sub_commands/count_main.o] Error 1
make[1]: *** Waiting for unfinished jobs....
make[1]: Leaving directory `/raid4/cgrb/MaSuRCA-2.2.0/jellyfish'
make: *** [install] Error 2
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