Unconfigured Ad

Collapse
X
 
  • Time
  • Show
Clear All
new posts
  • NGS_New_User
    Member
    • Sep 2012
    • 41

    #1

    Site with raw reads of Drosophila Melanogaster

    Hi Everyone,

    I have assembled a draft genome de novo of a non model organism (insect). I would like to compare it with Drosophila melanogaster (similarities etc) My plan is to map the Drosophila reads onto it and see how much of it will map onto our draft genome. My question is, where can I find the raw reads of D.melanogaster? What site can one direct me to that I can access D.mel reads?

    Thanks, and any info will be appreciated!!
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    ENA: http://www.ebi.ac.uk/ena/data/search...aster%20genome

    SRA: http://www.ncbi.nlm.nih.gov/Traces/s...e+genome&go=Go

    First entry in ENA looks promising but keep in mind that raw reads that went into the genome build may not be easily accessible.

    Comment

    • NGS_New_User
      Member
      • Sep 2012
      • 41

      #3
      Thank you so so much GenoMax, I really do appreciate it :-)

      Comment

      Latest Articles

      Collapse

      • SEQadmin2
        16S/ITS Profiling vs. Shotgun Metagenomics: What Changes in Your Workflow?
        by SEQadmin2




        NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification, detection...
        Yesterday, 06:46 AM
      • SEQadmin2
        Multiomic Liquid Biopsy: What DNA/RNA Panels Reveal That DNA Alone Can’t
        by SEQadmin2



        Tumors contain complex mixtures of cell populations that evolve in response to treatment and host-specific factors. Tissue biopsies provide only static snapshots of a tumor’s state. But what if we could follow that evolution over time using a minimally invasive technique?

        Liquid biopsies can detect tumor-derived material circulating in the bloodstream, providing a way to study treatment response, detect emerging resistance, and discover new biomarkers. Circulating
        ...
        10-14-2026, 09:55 AM

      ad_right_rmr

      Collapse

      News

      Collapse

      Topics Statistics Last Post
      Started by SEQadmin2, 10-28-2026, 09:57 AM
      0 responses
      28 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-28-2026, 09:51 AM
      0 responses
      18 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-22-2026, 11:13 AM
      0 responses
      71 views
      0 reactions
      Last Post SEQadmin2  
      Started by SEQadmin2, 10-22-2026, 10:48 AM
      0 responses
      48 views
      0 reactions
      Last Post SEQadmin2  
      Working...