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  • IMPERATOR
    Junior Member
    • Jan 2014
    • 9

    #1

    Samtools not compiling in Linux/UNIX cluster

    When I try to compile Samtools in my Linux cluster I get this error.

    This is what happens before it burps.


    gcc -g -Wall -O2 -o samtools bam_tview.o bam_plcmd.o sam_view.o bam_rmdup.o bam_rmdupse.o bam_mate.o bam_stat.o bam_color.o bamtk.o kaln.o bam2bcf.o bam2bcf_indel.o errmod.o sample.o cut_target.o phase.o bam2depth.o padding.o bedcov.o bamshuf.o bam_tview_curses.o bam_tview_html.o libbam.a -Lbcftools -lbcf -lcurses -lm -lz -lpthread


    /usr/lib64/gcc/x86_64-suse-linux/4.5/../../../../x86_64-suse-linux/bin/ld: cannot find -lcurses
    collect2: ld returned 1 exit status
    make: *** [samtools] Error 1


    Any help is appreciated
  • GenoMax
    Senior Member
    • Feb 2008
    • 7142

    #2
    You need to install ncurses and ncurses-devel libraries. You should be able to find them on the suse site.

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