Hi,
I have a list of genes and I want to check how many of them are spliced, i.e. have multiple exons. Many of these genes also exist in several isoforms, but I mostly just need to know if a gene is multi-exonic or not.
Any tips on how to efficiently calculate this? I have used bedtools before, but cannot see that it can do this task for me. Maybe cufflinks is an alternative, but I am not familiar with everything it can do.
Thanks,
Jon
I have a list of genes and I want to check how many of them are spliced, i.e. have multiple exons. Many of these genes also exist in several isoforms, but I mostly just need to know if a gene is multi-exonic or not.
Any tips on how to efficiently calculate this? I have used bedtools before, but cannot see that it can do this task for me. Maybe cufflinks is an alternative, but I am not familiar with everything it can do.
Thanks,
Jon
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