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Nicolas902

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Join Date: Feb 2010

Posts: 8
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tophat: junctions and reads

03-09-2010, 03:01 AM

Dear all,

I hope I did not miss something and that my question is not too obvious. Regarding the output file junctions.bed, how can we know if a read is mapping several junctions?

My aim is to know what percentage of the total reads are processed by tophat.

Thanks for your help.
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