Hi There,
I am having error while converting genebank file to gff format.
I am using genbank2gff.pl perl script but i am getting following error
------------- EXCEPTION -------------
MSG: type_map values must be scalar or CODE ref. You said: ARRAY(0x19c5050) for type: tRNA
STACK Bio::SeqFeature::Tools::TypeMapper::map_types /usr/local/share/perl/5.14.2/Bio/SeqFeature/Tools/TypeMapper.pm:194
STACK main::unflatten_seq genbank2gff.pl:891
STACK toplevel genbank2gff.pl:395
Can any body help me to find out the error..?
Thanks in advance..
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I used the first one and wow... It seemed to work perfectly in a fraction of a second! I'll try to use it in HTseq-count, but I think it should work.
Thanks a lot!!! I screened the web but missed this one!
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From GeneBank to .GFF
Hello everyone,
I'm working with an organism that doesn't have a proper .gff annotated file available on NCBI. However, I can have a full GeneBank file. Does anyone know how to "convert" or extract the information in order to create .gff from GeneBank? My organism has about 52 genes (a virus), so I guess I could almost do it manually, but still...
I have no true skills in programming, so... Any "easy" way of doing it?
TP
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