set allowed when aligning with BWA

Gorbenzer

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#1

set allowed when aligning with BWA

02-10-2014, 03:04 AM

Hi everyone,
i've been using BWA-mem for RnaSeq and i'd like to use this tool in order to find genes in public metagenomic datasets that are homolog to my gene pool.

There's a way to increase the number of errors allowed?

Should i look for another software? what one?

Thanks for your help!
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mastal

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Join Date: Mar 2009

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#2

02-10-2014, 03:51 AM

Try Blast or BLAT.
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jp.

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#3

04-27-2014, 10:21 PM

did any one get answer?
which stage blat should be used? .bam files or after annovar for mutations in exome seq?
thank you
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