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  • wonaya
    Junior Member
    • Oct 2012
    • 3
    #1

    QC for replicates in ChIP-seq

    Hi, I have some ChIP-seq data to QC.
    I was browsing for a pipeline where you can compare between biological replicates for their similarities, but haven't had any luck.
    Is there a standard algorithm people use for this besides viewing the mapped tracks?
    Thanks!
    Tags: None
  • rory
    Member
    • Aug 2008
    • 28
    #2
    The ChIPQC package in Bioconductor will show how all your ChIPs compare. It was designed specifically for dealing with replicates.

    -Rory

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