Does anybody know of a program to compare different gene sets on the same loci?
This is what I want to do: Our group is doing de-novo sequencing and assembly of a eukaryotic genome. I have run a lot of different gene finding programs on our sequence, and now I want to compare the gene models to a set of "correct" genes (that we have cloned and curated manually). I would like to end up with something similar to Table1 in this paper:
http://nar.oxfordjournals.org/cgi/co...2/suppl_2/W309
Before I start writing my own code to do this, I thought I would check if anyboby here knows of any programs (since this is a quite common thing, found in all papers about gene prediction programs).
thanks
/Jakub
Edit: Found this: http://www.biomedcentral.com/1471-2105/4/50
This is what I want to do: Our group is doing de-novo sequencing and assembly of a eukaryotic genome. I have run a lot of different gene finding programs on our sequence, and now I want to compare the gene models to a set of "correct" genes (that we have cloned and curated manually). I would like to end up with something similar to Table1 in this paper:
http://nar.oxfordjournals.org/cgi/co...2/suppl_2/W309
Before I start writing my own code to do this, I thought I would check if anyboby here knows of any programs (since this is a quite common thing, found in all papers about gene prediction programs).
thanks
/Jakub
Edit: Found this: http://www.biomedcentral.com/1471-2105/4/50