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  • jdiezperezj
    Junior Member
    • Mar 2010
    • 3
    #1

    Sam 2 ace

    Hi everyone,
    This is my first post on the list. I would like to know if there is a tool/script ... to convert from SAM format to ACE format.
    Cheers.
    Javi
    Tags: None
    • nataliaTS
      Junior Member
      • Feb 2012
      • 1
      #2
      SAM/BAM to ...

      Hi!!!
      I have the same problem. Anyone know how to covert SAM/Bam to other format like ACE???

      thanks

        Comment

        • sklages
          Senior Member
          • May 2008
          • 628
          #3
          At least for ACE,

          - convert SAM to BAM using samtools

          - use consed for the bam to ace conversion,

          Docs say (v22 or greater),
          "-Create an ace file from a bam file: consed -bam2Ace
          You can make an ace file out of just a targeted region of the
          reference sequence or out of the entire reference sequence.
          Cigars are shown in consed. By default, shallowerDepth
          (below) is included.
          "

          hth, Sven

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