Dear All,
I would like to analyze in a dataset of RNA Seq the expression of LINE1 transcripts ( called L1 ORF).
I would like to share with you any idea in the piepeline I may use.
I tried to align with Tophat with -G option the LINE1.gtf file, but I think this is not the correct way to do it.
A software that could help me to do this has recently been developed but to be honest the guidelines are poorly documented,
http://nerettilab.com/software/repenrich/
Could you please help me?
Many Thanks,
paolo
I would like to analyze in a dataset of RNA Seq the expression of LINE1 transcripts ( called L1 ORF).
I would like to share with you any idea in the piepeline I may use.
I tried to align with Tophat with -G option the LINE1.gtf file, but I think this is not the correct way to do it.
A software that could help me to do this has recently been developed but to be honest the guidelines are poorly documented,
http://nerettilab.com/software/repenrich/
Could you please help me?
Many Thanks,
paolo
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