Hello,
jModelTest tells me my best model is TIM1+I+G with an AIC of 58750.6, the third best model is the famous GTR+I+G has a deltaAIC 1.28.
Can I just use GTR+I+G, since it is supported by both programs? or do I need to somehow define the custom model of TIM1+I+G in both PHYML and MrBayes?
I am not really sure how to define custom models,
Adrian
Also posted here http://www.biostars.org/p/93627/
jModelTest tells me my best model is TIM1+I+G with an AIC of 58750.6, the third best model is the famous GTR+I+G has a deltaAIC 1.28.
Can I just use GTR+I+G, since it is supported by both programs? or do I need to somehow define the custom model of TIM1+I+G in both PHYML and MrBayes?
I am not really sure how to define custom models,
Adrian
Also posted here http://www.biostars.org/p/93627/
