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telos

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Join Date: Jan 2010

Posts: 11
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#1

TopHat bug

03-17-2010, 07:50 AM

Hello,

I have encountered a TopHat bug where completely erroneous CIGAR strings are produced, such as 9M6361N62M2695N536870911M, on 70bp reads. I attach a zip with a sample fasta file and the sam output file in the hope that one of the developers can pinpoint the problem.

Thanks
Attached Files

cigtest.zip (87.3 KB, 121 views)
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