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  • cjo4m4fm
    Junior Member
    • Aug 2013
    • 4

    #1

    undefined symbol: PyOS_string_to_double???

    When I implementing rdxplorer, an error occours:

    u31chu06@alps6:/work/u31chu06/software/rdxplorer> ./run_NA12868.sh
    Traceback (most recent call last):
    File "rdxplorer.py", line 3, in <module>
    import pileup as plp
    File "/work/u31chu06/software/rdxplorer/pileup.py", line 3, in <module>
    import v6
    File "/work/u31chu06/software/rdxplorer/v6.py", line 6, in <module>
    import file_utils as fu
    File "/work/u31chu06/software/rdxplorer/file_utils.py", line 7, in <module>
    import numpy as np
    File "/pkg/biology/python_packages/lib/python2.7/site-packages/numpy/__init__.py", line 153, in <module>
    from . import add_newdocs
    File "/pkg/biology/python_packages/lib/python2.7/site-packages/numpy/add_newdocs.py", line 13, in <module>
    from numpy.lib import add_newdoc
    File "/pkg/biology/python_packages/lib/python2.7/site-packages/numpy/lib/__init__.py", line 8, in <module>
    from .type_check import *
    File "/pkg/biology/python_packages/lib/python2.7/site-packages/numpy/lib/type_check.py", line 11, in <module>
    import numpy.core.numeric as _nx
    File "/pkg/biology/python_packages/lib/python2.7/site-packages/numpy/core/__init__.py", line 6, in <module>
    from . import multiarray
    ImportError: /pkg/biology/python_packages/lib/python2.7/site-packages/numpy/core/multiarray.so: undefined symbol: PyOS_string_to_double
    Doing this took 5 seconds
    DONE.


    Does anyone have any ideas about this??

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