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rohan_1925

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De novo assembly of reads

03-04-2014, 01:51 PM

For de novo assembly of reads around the predicted insertion / deletion in VCF files.

1.) How many base pairs flanking the indels are required to extract reads?

2.) how low can coverage be for CAP3 to generate a local assembly?
Tags: cap3, de novo assembly, indels, vcf

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