I ran tophat with the following commandline:
tophat2.0.0 -G genome.gff3 -o -o thout -r 180 genome2 seq1 seq2
and exited with the following error:
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[2014-03-07 23:35:21] Converting left_kept_reads.m2g to genomic coordinates (map2gtf)
[FAILED]
Error: map2gtf returned an error
----
could someone please help me out? Thanks a lot for your time!
tophat2.0.0 -G genome.gff3 -o -o thout -r 180 genome2 seq1 seq2
and exited with the following error:
----
[2014-03-07 23:35:21] Converting left_kept_reads.m2g to genomic coordinates (map2gtf)
[FAILED]
Error: map2gtf returned an error
----
could someone please help me out? Thanks a lot for your time!
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