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  • How to identify positions by gene

    Hi,I'm new here.
    I'm going to do rare variant analysis(CAST CMC)

    now I have a vcf file(only snp) which contains case and control group

    but there are too many positions

    are there any way to make them as gene set like MAP4,FLNB,ABTB1

    forgive me for my poor english,thx
    Last edited by penolove; 03-10-2014, 10:48 PM.

  • #2
    Have you tried snpeff: http://snpeff.sourceforge.net/

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