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  • chpawan
    Junior Member
    • Feb 2014
    • 2
    #1

    effective genome size for rat (rn5) for MACS analysis

    Dear All,

    I have got ChIP-Seq data (from rat and rn5 is used as the assembly) and I am trying to use MACS to do the peak calling. I have been searching for the effective genome size for rat to be used for the -g option in MACS for the peak calling process but I am not able to find the specific information. Anyone who has worked with rat data before or know of the effective genome size for rat, please help.

    Thank You

    Regards,
    Pawan
    Tags: effective genome size, macs chip-seq
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