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Dear All,
I have got ChIP-Seq data (from rat and rn5 is used as the assembly) and I am trying to use MACS to do the peak calling. I have been searching for the effective genome size for rat to be used for the -g option in MACS for the peak calling process but I am not able to find the specific information. Anyone who has worked with rat data before or know of the effective genome size for rat, please help.
Thank You
Regards,
Pawan
I have got ChIP-Seq data (from rat and rn5 is used as the assembly) and I am trying to use MACS to do the peak calling. I have been searching for the effective genome size for rat to be used for the -g option in MACS for the peak calling process but I am not able to find the specific information. Anyone who has worked with rat data before or know of the effective genome size for rat, please help.
Thank You
Regards,
Pawan