How to make alias file and run rpsbalst

Votinhkiem90

Member

Join Date: Sep 2013

Posts: 30
- Share
- Tweet
#1

How to make alias file and run rpsbalst

03-18-2014, 07:32 PM

hi everyone.
I have a problem, I have downloaded CDD database on NCBI and install ncbi-blast+. but when i run rpsblast have an error.
"BLAST Database error: Could not find volume or alias file (./home/lamnguyen/bin/ncbi-blast-2.2.29+/CDD/Cdd) referenced in alias file (/home/lamnguyen/bin/ncbi-blast-2.2.29+/bin/mycdd)"

mycdd has cread by http://www.ncbi.nlm.nih.gov/Structur....shtml#RPSBFtp

What should I do????:
Tags: None
TiborNagy

Senior Member

Join Date: Mar 2010

Posts: 329
- Share
- Tweet
#2

03-19-2014, 06:22 AM

Please share us the steps.
Comment
Votinhkiem90

Member

Join Date: Sep 2013

Posts: 30
- Share
- Tweet
#3

03-19-2014, 11:02 PM

Originally posted by TiborNagy View Post

Please share us the steps.

Thank for attention! I have finished it. I forgot run makeprofiledb to creat database before running rpsblast.
Comment
maubp

Peter (Biopython etc)

Join Date: Jul 2009

Posts: 1544
- Share
- Tweet
#4

03-20-2014, 07:14 AM

Or just download the CDD database ready to use from ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd/little_endian/
Comment

Previous template Next

Reply to Advanced Sequencing Platforms Tackle Neuroscience’s Toughest Genomics Problems

by mylaser

Kheloyaar: The Complete Guide to Kheloyaar Loginand Kheloyaar ID
The online gaming industry has transformed the way people enjoy digital entertainment. As technology continues to improve, players are looking for platforms that offer convenience, security, and a seamless user experience. Kheloyaarhas gained attention among users who value an easy-to-use platform, quick account access, and a simple registration process.
Whether you're exploring Kheloyaar for the first time or want to understand...
- Channel: Articles
Today, 09:27 PM
Advanced Sequencing Platforms Tackle Neuroscience’s Toughest Genomics Problems

by SEQadmin2

Genomics studies in neuroscience face a special challenge due to the brain’s complexity and scarcity of samples. Mapping changes in cell type and state using conventional next-generation sequencing methods remains challenging. Advances in technologies like single-cell sequencing, spatial transcriptomics, and long-read sequencing have opened the door to deeper studies of the brain and diseases like Alzheimer’s, amyotrophic lateral sclerosis (ALS), and schizophrenia.
...
- Channel: Articles
Today, 11:10 AM
Cancer Drug Resistance: The Lingering Barrier to Rising Survival

by SEQadmin2

Cancer survival rates have significantly increased in the last few decades in the United States, reaching a combined 70% 5-year survival rate by 2021. Behind this number, there are years of research to find new therapies, drug targets, and early detection methods. But there is one core challenge that keeps slowing down these advances, and it’s about drug resistance.

There is no single reason why many patients don’t respond to treatment as expected. Cancer is...
- Channel: Articles
Yesterday, 05:17 AM

Topics	Statistics	Last Post
New Analysis Splits Leukemia Into 16 Epigenomic Subgroups by SEQadmin2 Started by SEQadmin2, Today, 10:04 AM	0 responses 8 views 0 reactions	Last Post by SEQadmin2 Today, 10:04 AM
Genome-Wide CRISPR Screen Uncovers Unlikely Psoriasis Target by SEQadmin2 Started by SEQadmin2, Yesterday, 10:08 AM	0 responses 7 views 0 reactions	Last Post by SEQadmin2 Yesterday, 10:08 AM
Engineered Protein Motor Takes Its First Steps Along DNA Track by SEQadmin2 Started by SEQadmin2, 07-07-2026, 11:05 AM	0 responses 10 views 0 reactions	Last Post by SEQadmin2 07-07-2026, 11:05 AM
High-Resolution Sequencing Exposes Hidden Toxoplasma Diversity by SEQadmin2 Started by SEQadmin2, 07-02-2026, 11:08 AM	0 responses 31 views 0 reactions	Last Post by SEQadmin2 07-02-2026, 11:08 AM

Unconfigured Ad

How to make alias file and run rpsbalst

Comment

Comment

Comment

Latest Articles

ad_right_rmr

News