I am extremely new to Biopython and was hoping someone could help me. I have downloaded the complete GenBank files for Salmonella enterica serovar Typhimurium SL1344 (it has 3 plasmids and one chromosome and I have concatenated all of them into one file). I have a list of 123 gene names that I would like to make a Multi-FASTA file for. Is there an easy way to do this? Thank you so much for any and all help.
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I suggest you read http://www2.warwick.ac.uk/fac/sci/mo...genbank2fasta/ but also why not download the matching per-gene FASTA file from the NCBI and filter that?
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NGS has revolutionized clinical microbiology by offering new ways to identify and surveil pathogens without prior knowledge of the target. One popular approach is 16S rRNA and ITS amplicon sequencing, which targets specific microbial markers. But studies are increasingly incorporating shotgun metagenomics, a technique that sequences all DNA from a sample without targeting specific microbial markers. This approach allows more detailed taxonomic classification,...10-30-2026, 06:46 AM
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