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  • Brian Bushnell
    Super Moderator
    • Jan 2014
    • 2709

    #16
    Originally posted by paa6 View Post
    am sorry but again I am getting error
    singhparul@ubuntu:~/trim_ends$ java -ea -Xmx1g -cp /path/to/current/ jgi.BBDukF in=Illumina_raw_reads.fastq out=clean.fastq ktrim=r k=13 literal=AGATCGGAAGAGC minlen=20
    Error: Could not find or load main class jgi.BBDukF
    please tell me step by step...I am newbie in linux
    Rather than literally "/path/to/current/", you need to replace that with the path to the folder called "current". For example, it might be "/trim_ends/bbmap/current/"

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