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  • Boel
    Member
    • Oct 2009
    • 62

    #16
    Originally posted by shi View Post
    Another option is to use limma/voom, which accepts fractional counts.
    Is it recommended to feed 'cuffnorm-counts' to voom/limma?

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    • dpryan
      Devon Ryan
      • Jul 2011
      • 3478

      #17
      Originally posted by Boel View Post
      Is it recommended to feed 'cuffnorm-counts' to voom/limma?
      As cuffnorm isn't really documented, it's tough to say. If these values are generated by an EM algorithm (similar to RSEM's estimated counts) then it's probably be OK.

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