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  • Boel
    Member
    • Oct 2009
    • 62
    #16
    Originally posted by shi View Post
    Another option is to use limma/voom, which accepts fractional counts.
    Is it recommended to feed 'cuffnorm-counts' to voom/limma?

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      • dpryan
        Devon Ryan
        • Jul 2011
        • 3478
        #17
        Originally posted by Boel View Post
        Is it recommended to feed 'cuffnorm-counts' to voom/limma?
        As cuffnorm isn't really documented, it's tough to say. If these values are generated by an EM algorithm (similar to RSEM's estimated counts) then it's probably be OK.

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