Hi everyone,
I'm trying to generate an alignment using bowtie, and my output is supposed to be a .sam file. My command is
bowtie -x complete-genome -1 treat_1.fq -2 treat_2.fq -S output_treat.sam
The problem is I keep getting an error saying "could not locate a bowtie index corresponding to base name 'output_treat.sam'".
Any suggestions would be hugely appreciated. I'm completely new at this and my command line troubleshooting skill is still being developed.
I'm trying to generate an alignment using bowtie, and my output is supposed to be a .sam file. My command is
bowtie -x complete-genome -1 treat_1.fq -2 treat_2.fq -S output_treat.sam
The problem is I keep getting an error saying "could not locate a bowtie index corresponding to base name 'output_treat.sam'".
Any suggestions would be hugely appreciated. I'm completely new at this and my command line troubleshooting skill is still being developed.
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