What can I use to translate a large number of short nucleotides to all AA open reading frames?
I have a 27 GB illumina library in fasta format containing dna nucleotide sequences. I would like to convert the entire file into an AA fasta file containing all open reading frames.
I'm surprised and confused that I haven't found an easy way to do this. There are plenty of online tools, but I can't find a simple script that i can run on a server. I wrote a python script, but its too buggy. Does anyone know of a python script or something on git hub that I can download and run?
Server specs: Ubuntu 12.04, 24 cores, 50 GB of RAM
I have a 27 GB illumina library in fasta format containing dna nucleotide sequences. I would like to convert the entire file into an AA fasta file containing all open reading frames.
I'm surprised and confused that I haven't found an easy way to do this. There are plenty of online tools, but I can't find a simple script that i can run on a server. I wrote a python script, but its too buggy. Does anyone know of a python script or something on git hub that I can download and run?
Server specs: Ubuntu 12.04, 24 cores, 50 GB of RAM
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