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  • How to interpret the field, Match Chromosome, of the export file produced by GAP?

    Hi all,

    As titled, how to interpret the value of the 11th field, Match Chromosome, of the export file produced from the Illumina GAP v 1.3.2? As what I knew, the 22th field, Filtering, represents whether the read passed filtering, and the 11th field shows the match chromosome / match code why there is no match. If the value of the 11th field is 9:96:255 or 0:0:2, what does it mean? Thank you for your help.

    Best regards,
    Ying-Hsiang

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