ESTScan 3 installation

[kmkocot]

Hi all,

I'm having trouble installing ESTScan 3. Anyone have any idea what my problem is?

kmkocot@Epimenia:~/Desktop/estscan-3.0.3$ make 
gcc -O2 -c maskred.c
maskred.c: In function ‘mask_file’:
maskred.c:203:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(buf, 1024, stdin); 
          ^
maskred.c:210:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(buf, 1024, stdin); 
            ^
gcc -lm -o maskred maskred.o
gcc -O2 -c makesmat.c
makesmat.c: In function ‘count_tuples’:
makesmat.c:306:10: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
     fgets(buf, 1024, stdin); 
          ^
makesmat.c:325:12: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
       fgets(buf, 1024, stdin);
            ^
gcc -lm -o makesmat makesmat.o
makesmat.o: In function `print_pssm':
makesmat.c:(.text+0x33d): undefined reference to `log'
makesmat.c:(.text+0x362): undefined reference to `round'
makesmat.o: In function `main':
makesmat.c:(.text.startup+0xbb2): undefined reference to `log'
makesmat.c:(.text.startup+0xbf0): undefined reference to `round'
makesmat.c:(.text.startup+0xf45): undefined reference to `log'
makesmat.c:(.text.startup+0xf70): undefined reference to `round'
collect2: error: ld returned 1 exit status
make: *** [makesmat] Error 1
kmkocot@Epimenia:~/Desktop/estscan-3.0.3$

I know TransDecoder is probably better but I want to give both a try.

Thanks,
Kevin

[aloliveira]

I am having the same problems. Any solution?
Thanks,

[kmkocot]

For what it's worth, I would strongly recommend the newest TransDecoder over ESTScan.

I eventually did figure this out but I have no idea how as it has been years. Sorry I'm not more helpful.

Best,
Kevin

[GenoMax]

I am having the same problems. Any solution?
Thanks,

I think you need to link the math library which may require adding "-lm" option for gcc. If there is a Makefile in the source you can edit that.

[aloliveira]

Thanks Kevin, I have installed TransDecoder and I will give a try.