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  • liuteng
    Junior Member
    • Dec 2013
    • 1
    #1

    genewise2-4-1（or wise2-4-1） and EVM

    I used genewise to alignt a protein set to a genome which I assembled, and I got a GFF3 file. I want to use this GFF3 file to run my EVM, but the GFF3 file I got is different from the test GFF3 file in EVM example folder. How can I get the useable gff3 file from genewise to complete my EVM?

    the GFF3 file that I get from genewise:
    scaffold_0 GeneWise match 291215 288814 249.48 - . scaffold_0-genewise-prediction-1
    scaffold_0 GeneWise cds 291215 291015 0.00 - 0 scaffold_0-genewise-prediction-1
    scaffold_0 GeneWise intron 291014 290841 0.00 - . scaffold_0-genewise-prediction-1

    the GFF3 file in EVM example folder:
    9390 9557 . - . ID=match.genewise.nr_minus_rice.fasta.1152536;Target=GB|AAX11684.1|59896631|AY766462 336 2438
    Last edited by liuteng; 04-13-2014, 05:23 AM. Reason: complete my question
    Tags: alignment gff3, evm, genewise2-4-1, gff3, wise2-4-1
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