novoalign GLIBC error

yasu

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Join Date: Jul 2009

Posts: 10
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#1

novoalign GLIBC error

03-29-2010, 09:33 PM

Hi,

I am going to use novoalign for PE reads and I got the following error message:

$ novoalign -f s_1_1_.fq s_1_2_.fq -d hg19
novoalign: /lib64/libc.so.6: version `GLIBC_2.7' not found (required by novoalign)

I did
$ strings /lib64/tls/libc.so.6 | grep GLIBC
GLIBC_2.2.5
GLIBC_2.2.6
GLIBC_2.3
GLIBC_2.3.2
GLIBC_2.3.3
GLIBC_2.3.4
GLIBC_2.4
GLIBC_2.5
GLIBC_PRIVATE

and I also tried to update of glibc
$ yum update glibc
but I got the following message 'No Packages marked for Update'.

I used CentOS5.4_x86_64/

Any suggestions to fix this problem?
Thanks a lot!
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sparks

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Join Date: Mar 2008

Posts: 126
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#2

03-29-2010, 10:33 PM

Novoalign GLIBC Error

Hi Yasu,

On down;load page there is a static linked version of Novoalign that should avoid this problem.

Colin
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yasu

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Join Date: Jul 2009

Posts: 10
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#3

03-29-2010, 10:52 PM

Hi Colin,
Thanks for your quick response!!
It works well!!
-Yasu
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