Hi, my simple problem is that considering I have a CS read with qualities like:
How will I able to convert this correctly into a format (ie SAM) ? I can easily assign nucleotides to the T312... sequence but I could not really figure out how to map the color qualities to nucleotide ones.
Sorry if my question was already answered but after and hour searching I did not manage to find a proper answer - so any related docs are appreciated.
Cheers:
Szilva
Code:
>1_2_3_F3 T32123202112210132121031230312312212231012221122201 >1_2_3_F3 2 2 2 2 2 5 7 2 2 4 8 4 2 5 2 2 3 2 2 2 4 3 2 2 2 2 11 2 2 3 2 4 2 2 2 8 12 2 4 2 8 5 2 2 2 10 3 2 2 2
Sorry if my question was already answered but after and hour searching I did not manage to find a proper answer - so any related docs are appreciated.
Cheers:
Szilva
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