I am using 454 reads in Mosaik to generate bam files to view alignments with a reference sequence in Artemis (Sanger). Does anyone know a good way to get mate-paired (3kb linker) 454 sff files into Mosaik? Mosaik seems to require separate forward and reverse fasta and qual files (or fastq) for the pairs, which are not easily generated by sff_extract or Newbler.
Thanks for your advice.
Tony
Thanks for your advice.
Tony
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