Bowtie re-start from last place?

[thh32]

Hi very basic question, I have just had to stop bowtie2 running due to system update of our cluster however I was wondering if I resubmit the same request will it identify where it got to and continue on or will it start from the first read?

Thanks,
Tom

[GenoMax]

If this was a straight bowtie2 run then it will have to be started again.

[thh32]

Its a bowtie2 run to seperate the aligned and nonaligned reads to a referance genome. Ok thanks for letting me know.