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Hi all!
I'm using Pindel to analyse 200 samples on a small region.
When I ran for single samples, it was OK and I could see variants > 70 kb.
However, it did not report these variants when I ran for multiple samples OR it stopped after one day.
The command line I used
Could you please help me!
Thanks!
I'm using Pindel to analyse 200 samples on a small region.
When I ran for single samples, it was OK and I could see variants > 70 kb.
However, it did not report these variants when I ran for multiple samples OR it stopped after one day.
The command line I used
Code:
pindel -f $ref -i All.pindel.cfg -c 1:21500000-23500000 -x 6 -o All.pindel.out
Thanks!