Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • malloc error in cuffcompare

    I'm getting a malloc error when running cuffcompare v0.8.2 on Mac OS X.
    Here is the verbose messaging when the error appears:

    Code:
     Missed introns:        77098/240992 ( 32.0%)
      Wrong introns:        3732/127345 (  2.9%)
     Missed loci:   0/25081 (  0.0%)
      Wrong loci:   100521/156958 ( 64.0%)
    Tracking transcripts across 10 query files..
    Processing sequence from fasta file '/Users/gene/Bioinformatics/sequence_db/hg19/chromosomes/chr1.fa'
    Processing sequence from fasta file '/Users/gene/Bioinformatics/sequence_db/hg19/chromosomes/chr2.fa'
    Processing sequence from fasta file '/Users/gene/Bioinformatics/sequence_db/hg19/chromosomes/chr3.fa'
    Processing sequence from fasta file '/Users/gene/Bioinformatics/sequence_db/hg19/chromosomes/chr4.fa'
    Processing sequence from fasta file '/Users/gene/Bioinformatics/sequence_db/hg19/chromosomes/chr5.fa'
    cuffcompare(42796) malloc: *** error for object 0x1d0630e20: incorrect checksum for freed object - object was probably modified after being freed.
    *** set a breakpoint in malloc_error_break to debug
    Abort trap
    Has anyone else seen this? Cole et al, let me know if you want any additional data to help debug this.

    Gene

Latest Articles

Collapse

  • seqadmin
    Best Practices for Single-Cell Sequencing Analysis
    by seqadmin



    While isolating and preparing single cells for sequencing was historically the bottleneck, recent technological advancements have shifted the challenge to data analysis. This highlights the rapidly evolving nature of single-cell sequencing. The inherent complexity of single-cell analysis has intensified with the surge in data volume and the incorporation of diverse and more complex datasets. This article explores the challenges in analysis, examines common pitfalls, offers...
    06-06-2024, 07:15 AM
  • seqadmin
    Latest Developments in Precision Medicine
    by seqadmin



    Technological advances have led to drastic improvements in the field of precision medicine, enabling more personalized approaches to treatment. This article explores four leading groups that are overcoming many of the challenges of genomic profiling and precision medicine through their innovative platforms and technologies.

    Somatic Genomics
    “We have such a tremendous amount of genetic diversity that exists within each of us, and not just between us as individuals,”...
    05-24-2024, 01:16 PM

ad_right_rmr

Collapse

News

Collapse

Topics Statistics Last Post
Started by seqadmin, Yesterday, 07:23 AM
0 responses
8 views
0 likes
Last Post seqadmin  
Started by seqadmin, 06-17-2024, 06:54 AM
0 responses
12 views
0 likes
Last Post seqadmin  
Started by seqadmin, 06-14-2024, 07:24 AM
0 responses
24 views
0 likes
Last Post seqadmin  
Started by seqadmin, 06-13-2024, 08:58 AM
0 responses
18 views
0 likes
Last Post seqadmin  
Working...
X