Does anyone know a program that merges neighbouring SNPs in a vcf file into MNPs (multinucleotide polymorphisms)?
Ideally, SNPs should only be merged if they are in perfect linkage disequilibrium, and any SNPs that are in partial LD should be shown as separate entries, i.e. as MNPs as well as SNPs (though that's maybe asked too much).
Thanks!
Ideally, SNPs should only be merged if they are in perfect linkage disequilibrium, and any SNPs that are in partial LD should be shown as separate entries, i.e. as MNPs as well as SNPs (though that's maybe asked too much).
Thanks!
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